Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3876

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12243 and 12244 are separated by 425 nucleotides12244 and 12245 are separated by 417 nucleotides mRNA_3875: 12243 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 802,441 to 804,314 12243 mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816 12244 mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789 12245

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
804,037 + 12243 mRNA_3875 0.85 -1.6
804,051 - 12243 mRNA_3875 0.86 +1.2
804,177 + -1.6
804,190 + -1.9
804,323 - +0.7
804,326 - -3.6
804,334 + -1.2
804,335 + -0.6
804,344 + -1.0
804,489 + -1.3
804,750 + +1.2
804,759 - -1.8
805,179 - 12244 mRNA_3876 0.21 -2.6
805,341 - 12244 mRNA_3876 0.29 -2.0
805,799 + 12244 mRNA_3876 0.51 -1.1
806,236 - 12244 mRNA_3876 0.72 -1.8
806,239 - 12244 mRNA_3876 0.72 -1.4
806,284 - 12244 mRNA_3876 0.74 -1.2
806,517 - 12244 mRNA_3876 0.86 -1.3
806,669 - -0.4
807,109 + -1.0

Or see this region's nucleotide sequence