Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3885

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12253 and 12254 are separated by 264 nucleotides mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822,787 to 823,648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823,913 to 825,750 12254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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821,791 - -3.0
821,794 - -0.1
821,803 - -1.7
821,809 + -3.0
821,811 - -1.2
821,811 - -3.5
821,814 - +1.2
821,822 - -1.7
821,835 - -1.8
821,836 + -2.4
821,841 - -2.1
821,845 + -0.7
821,849 - -1.4
821,857 - -2.7
821,866 - -0.1
821,875 - -1.1
821,876 + -3.0
821,880 - -0.1
821,881 + -1.8
821,884 + -2.2
821,896 + -0.8
821,898 - -3.8
821,899 - +0.0
821,900 - -0.1
821,902 - +0.1
821,903 + -1.2
821,907 - -2.9
821,910 - -2.8
821,910 + -1.2
821,916 - -0.9
821,918 + +0.5
821,924 - +0.3
821,925 - -4.1
821,926 + -0.1
821,931 - +0.4
821,931 + -0.7
821,935 - -1.3
821,939 - -2.2
821,940 + -0.1
821,951 - -1.7
821,954 + +0.3
821,955 - -2.8
821,962 + -2.1
821,964 - -1.0
821,967 - -1.5
821,967 + -1.7
821,970 + -1.3
821,976 + -2.5
821,988 - -3.0
821,989 + +0.3
821,999 + -2.1
821,999 - +0.9
822,026 + -0.3
822,028 - -0.4
822,042 + -0.4
822,048 + -0.9
822,061 + -0.9
822,063 - -1.1
822,068 + -1.4
822,069 + -1.4
822,071 - -1.8
822,072 - -1.9
822,079 - -0.6
822,082 - -2.2
822,082 + -2.1
822,083 - -0.1
822,084 - -2.1
822,086 - -0.1
822,087 + -2.5
822,094 + -0.3
822,097 - -2.0
822,105 + -2.1
822,105 + -1.4
822,115 - -0.7
822,117 + -0.4
822,119 - +0.2
822,127 + -3.2
822,155 + -0.0
822,159 + -2.1
822,166 - +0.2
822,187 - -1.3
822,192 + +0.2
822,197 + -0.3
822,197 - -2.1
822,213 - -0.5
822,220 + -1.4
822,224 - +0.4
822,229 + -0.3
822,246 - -0.2
822,247 - -0.9
822,257 - -2.2
822,257 - -2.0
822,260 + -0.2
822,262 - +0.5
822,265 - -0.2
822,266 + +1.2
822,290 + -0.7
822,299 - -1.5
822,300 - -2.6
822,305 - -0.1
822,311 - -0.1
822,313 + -1.1
822,314 + -2.2
822,320 + -0.4
822,325 - +1.0
822,325 - -0.5
822,330 + -0.6
822,370 - -2.4
822,374 - -2.8
822,376 + +0.7
822,384 + -1.0
822,392 - -0.7
822,400 + -1.6
822,407 - +0.8
822,413 + -1.6
822,445 + -0.1
822,457 - +1.2
822,462 + -1.1
822,470 - -3.4
822,473 + -1.8
822,484 + -2.9
822,485 - -0.1
822,485 - -0.1
822,486 + +1.1
822,495 + +0.1
822,495 - -3.2
822,515 - -1.5
822,530 - -0.8
822,531 - -2.0
822,532 + -0.2
822,534 + +0.2
822,545 + -1.2
822,554 - -0.2
822,559 + -2.6
822,559 - -0.6
822,563 + +1.8
822,569 - -1.0
822,588 + -2.2
822,591 + -0.6
822,600 + -1.2
822,611 + +0.0
822,613 + +1.1
822,614 - -1.1
822,621 - -0.8
822,621 - +0.8
822,621 - -0.7
822,624 + -3.4
822,631 - -3.2
822,638 + -0.6
822,640 - -3.2
822,657 - -4.4
822,676 + -1.7
822,757 + -1.5
822,784 - -1.2
822,787 + -1.2
822,787 - -0.8
823,082 + 12253 mRNA_3885 0.34 +0.3
823,096 + 12253 mRNA_3885 0.36 +0.0
823,237 + 12253 mRNA_3885 0.52 -0.7
823,241 + 12253 mRNA_3885 0.53 -3.6
823,309 + 12253 mRNA_3885 0.61 -1.5
823,551 + 12253 mRNA_3885 0.89 -0.8
823,699 - -0.7
824,026 - -0.7
824,306 - 12254 mRNA_3886 0.21 -0.6
824,402 + 12254 mRNA_3886 0.27 -1.1
824,405 - 12254 mRNA_3886 0.27 -0.8
824,421 - 12254 mRNA_3886 0.28 +2.2

Or see this region's nucleotide sequence