Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3970

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12337 and 12338 are separated by 187 nucleotides12338 and 12339 are separated by 661 nucleotides mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1,025,605 to 1,026,362 12337 mRNA_3970: 12338 - Hypothetical Protein, at 1,026,550 to 1,027,191 12338 mRNA_3971: 12339 - K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e, at 1,027,853 to 1,028,767 12339

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,025,936 + 12337 mRNA_3969 0.44 +0.0
1,025,954 - 12337 mRNA_3969 0.46 +0.2
1,026,107 + 12337 mRNA_3969 0.66 -1.4
1,026,436 + -2.2
1,026,931 - 12338 mRNA_3970 0.59 -0.1
1,026,931 + 12338 mRNA_3970 0.59 -1.5
1,026,953 + 12338 mRNA_3970 0.63 +0.7
1,027,077 - 12338 mRNA_3970 0.82 +0.6
1,027,231 - +0.6
1,027,242 - -0.0
1,027,258 - -3.4

Or see this region's nucleotide sequence