Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4032

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12400 and 12401 are separated by 269 nucleotides mRNA_4032: 12400 - Hypothetical Protein, at 1,198,442 to 1,200,513 12400 mRNA_4033: 12401 - K17675 SUPV3L1, SUV3 ATP-dependent RNA helicase SUPV3L1/SUV3, at 1,200,783 to 1,202,735 12401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,197,800 - +0.2
1,198,097 + -0.7
1,198,317 + -0.9
1,198,562 - +0.9
1,198,610 - +0.6
1,198,677 + 12400 mRNA_4032 0.11 -1.4
1,198,714 - 12400 mRNA_4032 0.13 -2.6
1,198,971 - 12400 mRNA_4032 0.26 -3.1
1,199,158 + 12400 mRNA_4032 0.35 -2.5
1,199,171 + 12400 mRNA_4032 0.35 -1.0
1,199,345 - 12400 mRNA_4032 0.44 -1.4
1,199,592 - 12400 mRNA_4032 0.56 -1.8
1,200,307 + -0.4
1,200,460 - -0.2
1,200,463 - -3.3
1,200,569 + -1.5
1,200,753 + -1.9

Or see this region's nucleotide sequence