Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4046

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12413 and 12414 are separated by 240 nucleotides mRNA_4045: 12413 - Hypothetical Protein, at 1,226,849 to 1,229,104 12413 mRNA_4046: 12414 - HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452, at 1,229,345 to 1,230,784 12414

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,229,004 + -0.4
1,229,282 + -1.7
1,229,406 - -1.8
1,229,453 + -1.2
1,229,511 - 12414 mRNA_4046 0.12 -1.3
1,229,710 - 12414 mRNA_4046 0.25 -0.8
1,229,727 + 12414 mRNA_4046 0.27 -2.5
1,229,730 - 12414 mRNA_4046 0.27 +0.1
1,229,743 + 12414 mRNA_4046 0.28 -0.5
1,229,749 + 12414 mRNA_4046 0.28 -0.8
1,229,853 - 12414 mRNA_4046 0.35 -1.1
1,229,870 + 12414 mRNA_4046 0.36 -2.1
1,229,871 + 12414 mRNA_4046 0.37 -4.9
1,229,873 + 12414 mRNA_4046 0.37 +0.6
1,229,882 + 12414 mRNA_4046 0.37 -2.9
1,229,883 + 12414 mRNA_4046 0.37 -2.2
1,229,885 - 12414 mRNA_4046 0.38 -1.1
1,229,888 - 12414 mRNA_4046 0.38 -2.5
1,229,905 - 12414 mRNA_4046 0.39 +0.1
1,229,910 + 12414 mRNA_4046 0.39 -0.1
1,229,914 + 12414 mRNA_4046 0.40 -2.0
1,229,917 + 12414 mRNA_4046 0.40 -1.5
1,229,924 + 12414 mRNA_4046 0.40 -1.4
1,229,925 + 12414 mRNA_4046 0.40 -0.6
1,229,933 - 12414 mRNA_4046 0.41 -2.9
1,229,939 - 12414 mRNA_4046 0.41 +0.6
1,230,060 - 12414 mRNA_4046 0.50 -2.2
1,230,062 - 12414 mRNA_4046 0.50 -2.5
1,230,063 + 12414 mRNA_4046 0.50 +0.6
1,230,083 + 12414 mRNA_4046 0.51 -1.5
1,230,209 + 12414 mRNA_4046 0.60 -3.1
1,230,215 + 12414 mRNA_4046 0.60 -1.4
1,230,763 - +0.5
1,230,777 + -0.3
1,230,829 - -2.0
1,230,916 + -1.4
1,230,922 + -3.0
1,230,981 - -2.1
1,231,197 + -0.7
1,231,326 - -2.3
1,231,367 - -0.9
1,231,369 + -3.2
1,231,650 - -1.0
1,231,657 + -1.1
1,231,657 + -1.1

Or see this region's nucleotide sequence