Experiment: 40 hrs No Buoyancy Separation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertions' strand.
Conventionally, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
mRNA_4049: 12417 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,236,078 to 1,237,368
12417
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Per-strain Table Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation remove 1,235,210 - -1.1 1,235,364 - -2.5 1,235,678 + -0.1 1,235,827 + -0.2 1,235,891 - -1.9 1,236,239 - 12417 mRNA_4049 0.12 -1.7 1,236,386 + 12417 mRNA_4049 0.24 -3.0 1,236,549 + 12417 mRNA_4049 0.36 -2.2 1,236,549 - 12417 mRNA_4049 0.36 -1.5 1,236,657 - 12417 mRNA_4049 0.45 -1.5 1,236,704 + 12417 mRNA_4049 0.48 -0.4 1,236,993 - 12417 mRNA_4049 0.71 -3.3 1,237,335 + -1.4 1,237,398 - -1.7 1,237,431 - -0.9 1,237,438 + -0.7 1,237,440 - -0.9 1,237,440 - -1.1 1,237,444 - -1.5 1,237,452 + -0.3 1,237,478 - -1.5 1,237,494 - -2.1 1,237,538 + +2.7 1,237,545 - -4.0 1,237,545 - -0.4 1,237,557 + -2.3 1,237,567 + -3.7 1,237,578 + -0.1 1,237,580 + -1.9 1,237,585 + -1.1 1,237,587 + -2.5 1,237,599 - -2.1 1,237,600 - +0.6 1,237,601 + -0.0 1,237,602 - -3.1 1,237,603 - -1.2 1,237,603 - -1.5 1,237,603 - -1.9 1,237,603 - -1.6 1,237,606 - -2.0 1,237,607 - -0.9 1,237,614 + +0.2 1,237,617 + -1.6 1,237,617 - -1.4 1,237,621 + -0.7 1,237,623 + +0.3 1,237,626 - -1.6 1,237,628 + -2.9 1,237,628 + +1.1 1,237,635 + -1.4 1,237,638 + -0.9 1,237,641 + -2.5 1,237,643 + -0.3 1,237,645 + -3.0 1,237,645 + -2.1 1,237,645 - -1.4 1,237,646 + -1.9 1,237,649 + -0.8 1,237,679 - -1.2 1,237,686 + -1.9 1,237,687 + +0.4 1,237,696 - -0.6 1,237,749 - -1.4 1,237,760 + -1.6 1,237,761 - -2.3 1,237,761 - +0.2 1,237,762 + -1.5 1,237,762 - -0.7 1,237,763 - -1.2 1,237,764 - -0.8 1,237,774 + -0.8 1,237,774 - -3.0 1,237,774 + +0.9 1,237,774 - -3.7 1,237,775 + -2.2 1,237,776 - +0.4 1,237,777 + -1.0 1,237,784 - +0.0 1,237,787 + -2.2 1,237,795 - -1.1 1,237,800 - -2.4 1,237,816 + -1.3 1,237,841 - -1.7 1,237,847 - -1.1 1,237,850 - -2.4 1,237,855 + -1.8 1,237,863 - -1.4 1,237,867 - -0.7 1,237,877 + -1.0 1,237,877 + -0.0 1,237,877 + +0.8 1,237,884 + +1.6 1,237,886 - +0.6 1,237,887 - +1.8 1,237,887 + -0.5 1,237,888 - +0.7 1,237,891 - -1.7 1,237,893 + -0.5 1,237,893 - -1.8 1,237,894 + +1.0 1,237,905 + -2.4 1,237,906 - -2.5 1,237,907 - +0.2 1,237,908 + -1.1 1,237,909 - -3.2 1,237,914 - -0.3 1,237,926 + -1.4 1,237,937 - -2.0 1,237,939 - +0.2 1,237,962 - +0.3 1,237,964 + -2.0 1,237,968 + +0.1 1,237,998 - -0.6 1,238,001 - -2.0 1,238,007 - -0.9 1,238,022 - -1.6 1,238,023 + +1.0 1,238,052 + +0.2 1,238,055 - -1.0 1,238,064 - -0.4 1,238,064 + -2.0 1,238,067 - +1.1 1,238,074 + -0.7 1,238,074 + -2.0 1,238,088 - -1.8 1,238,089 - -2.4 1,238,111 + -2.9 1,238,171 + -2.9 1,238,176 + -0.3 1,238,180 - -2.3 1,238,186 + -2.4 1,238,205 - +0.1 1,238,207 - -1.5 1,238,213 - -0.3 1,238,218 + -1.9 1,238,221 - -3.6 1,238,223 + -1.5 1,238,225 + -2.3 1,238,237 - -1.6 1,238,248 + -2.1 1,238,249 - -3.9 1,238,249 - -1.3 1,238,251 + -3.1 1,238,251 - -1.7 1,238,254 - +2.0 1,238,258 + +0.4 1,238,261 + -0.8 1,238,267 + -0.2 1,238,286 - -2.3 1,238,286 + -2.5 1,238,287 - -0.5 1,238,319 + -0.2 1,238,322 - -3.8 1,238,323 + -1.7 1,238,325 + -2.8 1,238,367 - -1.1
Or see this region's nucleotide sequence