Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4092

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12459 and 12460 are separated by 166 nucleotides12460 and 12461 are separated by 235 nucleotides mRNA_4091: 12459 - K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11, at 1,334,109 to 1,336,957 12459 mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1,337,124 to 1,338,710 12460 mRNA_4093: 12461 - Hypothetical Protein, at 1,338,946 to 1,342,318 12461

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,336,178 - 12459 mRNA_4091 0.73 -0.2
1,336,778 - -1.0
1,336,874 + -4.1
1,336,877 + -0.8
1,337,036 - +0.7
1,337,046 + +0.1
1,337,063 - -0.3
1,337,066 + -0.4
1,337,072 + +1.2
1,337,196 + -0.3
1,337,228 + -0.8
1,337,933 - 12460 mRNA_4092 0.51 -1.7
1,338,515 + 12460 mRNA_4092 0.88 -1.6
1,338,653 - -1.6
1,338,788 + -2.9
1,339,497 + 12461 mRNA_4093 0.16 -2.6

Or see this region's nucleotide sequence