Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4133

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12501 and 12502 are separated by 670 nucleotides mRNA_4133: 12501 - Hypothetical Protein, at 1,428,021 to 1,428,981 12501 mRNA_4134: 12502 - Hypothetical Protein, at 1,429,652 to 1,434,767 12502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,427,037 + -0.6
1,427,297 - -0.5
1,427,459 - -1.7
1,427,583 + -1.0
1,427,590 - -1.4
1,427,609 - -1.5
1,427,609 - -0.4
1,427,732 - -2.2
1,427,758 + -1.6
1,427,880 - -2.4
1,427,888 + -1.1
1,427,890 + -1.5
1,427,890 + -1.2
1,427,895 - -1.9
1,427,898 + +3.1
1,427,898 - -0.6
1,427,898 - -1.2
1,427,907 - -1.2
1,427,907 - -2.7
1,427,910 - -0.7
1,427,910 + -0.9
1,427,911 + -1.8
1,427,911 + -3.6
1,427,911 - +0.7
1,427,911 - -1.2
1,427,912 - -3.2
1,427,912 + +0.8
1,427,914 + +0.3
1,427,916 + -0.6
1,427,927 + -0.2
1,427,928 + -3.9
1,427,929 + -2.1
1,427,931 + -1.0
1,427,932 + -1.2
1,427,936 + +1.1
1,427,942 - -2.3
1,427,952 + -0.7
1,427,953 - +0.9
1,427,981 + -0.3
1,428,177 + 12501 mRNA_4133 0.16 -0.9
1,428,223 - 12501 mRNA_4133 0.21 +2.5
1,428,226 + 12501 mRNA_4133 0.21 -0.4
1,428,238 - 12501 mRNA_4133 0.23 -2.2
1,428,246 - 12501 mRNA_4133 0.23 -0.9
1,428,246 - 12501 mRNA_4133 0.23 +0.3
1,428,248 - 12501 mRNA_4133 0.24 -2.2
1,428,249 + 12501 mRNA_4133 0.24 -0.8
1,428,260 - 12501 mRNA_4133 0.25 -3.6
1,428,261 - 12501 mRNA_4133 0.25 -0.5
1,428,283 - 12501 mRNA_4133 0.27 -0.4
1,428,284 + 12501 mRNA_4133 0.27 -1.3
1,428,292 - 12501 mRNA_4133 0.28 -1.9
1,428,295 + 12501 mRNA_4133 0.29 -0.2
1,428,295 - 12501 mRNA_4133 0.29 -0.8
1,428,295 - 12501 mRNA_4133 0.29 -0.3
1,428,295 - 12501 mRNA_4133 0.29 +0.1
1,428,297 - 12501 mRNA_4133 0.29 -2.0
1,428,297 - 12501 mRNA_4133 0.29 -0.3
1,428,297 - 12501 mRNA_4133 0.29 -0.4
1,428,298 + 12501 mRNA_4133 0.29 -1.2
1,428,298 + 12501 mRNA_4133 0.29 -3.1
1,428,298 + 12501 mRNA_4133 0.29 -0.5
1,428,300 - 12501 mRNA_4133 0.29 -1.4
1,428,300 - 12501 mRNA_4133 0.29 -0.7
1,428,300 - 12501 mRNA_4133 0.29 -0.4
1,428,301 + 12501 mRNA_4133 0.29 -2.1
1,428,302 - 12501 mRNA_4133 0.29 -2.1
1,428,303 + 12501 mRNA_4133 0.29 -0.6
1,428,304 + 12501 mRNA_4133 0.29 -1.8
1,428,309 - 12501 mRNA_4133 0.30 -0.6
1,428,310 + 12501 mRNA_4133 0.30 +1.3
1,428,310 - 12501 mRNA_4133 0.30 -0.2
1,428,314 + 12501 mRNA_4133 0.30 -2.3
1,428,320 - 12501 mRNA_4133 0.31 +0.6
1,428,334 - 12501 mRNA_4133 0.33 -0.7
1,428,340 - 12501 mRNA_4133 0.33 -2.6
1,428,346 - 12501 mRNA_4133 0.34 -1.5
1,428,353 - 12501 mRNA_4133 0.35 -0.9
1,428,365 - 12501 mRNA_4133 0.36 -0.9
1,428,370 + 12501 mRNA_4133 0.36 +0.1
1,428,410 - 12501 mRNA_4133 0.40 -2.0
1,428,473 - 12501 mRNA_4133 0.47 +0.1
1,428,481 - 12501 mRNA_4133 0.48 -1.3
1,428,500 - 12501 mRNA_4133 0.50 -0.8
1,428,504 - 12501 mRNA_4133 0.50 -2.8
1,428,507 - 12501 mRNA_4133 0.51 -0.7
1,428,520 + 12501 mRNA_4133 0.52 +2.0
1,428,522 - 12501 mRNA_4133 0.52 -1.7
1,428,536 - 12501 mRNA_4133 0.54 -0.2
1,428,655 - 12501 mRNA_4133 0.66 -0.1
1,428,655 - 12501 mRNA_4133 0.66 -2.6
1,428,664 + 12501 mRNA_4133 0.67 -1.5
1,428,664 - 12501 mRNA_4133 0.67 -2.7
1,428,672 + 12501 mRNA_4133 0.68 -1.3
1,428,680 - 12501 mRNA_4133 0.69 -1.5
1,428,685 + 12501 mRNA_4133 0.69 +0.2
1,428,688 + 12501 mRNA_4133 0.69 -3.0
1,428,693 - 12501 mRNA_4133 0.70 -3.6
1,428,696 + 12501 mRNA_4133 0.70 -1.9
1,428,710 + 12501 mRNA_4133 0.72 +0.2
1,428,963 - +0.0
1,428,983 + -0.1
1,429,118 - -1.6
1,429,132 + -1.7
1,429,292 - -0.4
1,429,429 - -3.1

Or see this region's nucleotide sequence