Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4136

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4136: 12504 - K19838 SST2 GTPase-activating protein SST2, at 1,439,896 to 1,442,005 12504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,438,916 + +0.1
1,438,930 - -1.9
1,438,930 + -0.1
1,438,938 - -1.4
1,438,938 + +0.7
1,438,945 - -3.7
1,438,949 + -1.6
1,438,968 + -3.3
1,438,969 + -1.4
1,438,972 - +0.6
1,439,011 + +0.0
1,439,026 + -0.3
1,439,095 - -2.5
1,439,101 + -1.0
1,439,115 + -4.4
1,439,119 - -1.8
1,439,123 - +0.3
1,439,131 - +0.3
1,439,135 - -0.0
1,439,136 - -0.9
1,439,136 - +0.3
1,439,145 + +1.1
1,439,146 + -1.1
1,439,146 - -0.1
1,439,281 - -0.1
1,439,285 + -2.1
1,439,298 - -2.2
1,439,299 - -2.2
1,439,319 + -0.4
1,439,418 - -0.7
1,439,434 + -2.5
1,439,449 - -1.2
1,439,452 - -0.0
1,439,465 + -0.5
1,439,467 + -0.6
1,439,468 - -4.9
1,439,592 - -0.3
1,439,596 - +0.9
1,439,597 - -0.6
1,439,605 - -2.6
1,439,606 - -1.6
1,439,609 - +0.0
1,439,611 - -0.8
1,439,615 + -0.0
1,439,617 - -2.5
1,439,617 + +0.1
1,439,626 + +0.1
1,439,632 + +0.7
1,439,634 - -0.7
1,439,635 + -0.1
1,439,636 - -0.9
1,439,654 + -4.6
1,439,779 - -0.8
1,439,944 - -2.0
1,440,094 - +1.1
1,440,188 - 12504 mRNA_4136 0.14 -0.5
1,440,382 + 12504 mRNA_4136 0.23 -1.1
1,440,535 - 12504 mRNA_4136 0.30 -2.9
1,440,811 - 12504 mRNA_4136 0.43 -2.5
1,441,057 + 12504 mRNA_4136 0.55 -4.5
1,441,281 + 12504 mRNA_4136 0.66 -0.5
1,441,422 - 12504 mRNA_4136 0.72 +0.5
1,441,829 + -1.9
1,441,853 + -1.3
1,441,867 + -1.8
1,442,134 + -1.3
1,442,142 + -2.5
1,442,258 - +1.1
1,442,261 - -0.5
1,442,262 + -3.2
1,442,267 - -0.2
1,442,292 - -1.2
1,442,309 - -0.4
1,442,310 + -1.0
1,442,338 + -0.9
1,442,458 - -0.4
1,442,462 + -0.6
1,442,475 - -2.9
1,442,483 - -3.3
1,442,612 + +0.9
1,442,624 + +0.5
1,442,758 - -1.0
1,442,768 + -1.6
1,442,776 + -0.7
1,442,783 - -1.3
1,442,784 - -2.5
1,442,784 + -2.5
1,442,792 - -1.4
1,442,797 + -1.3
1,442,929 + -3.2
1,442,941 + -0.9
1,442,981 + -3.0

Or see this region's nucleotide sequence