Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4170

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12538 and 12539 are separated by 933 nucleotides mRNA_4170: 12538 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 1,524,974 to 1,527,080 12538 mRNA_4171: 12539 - KOG2806 Chitinase, at 1,528,014 to 1,529,581 12539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,524,073 - -2.7
1,524,235 - -1.2
1,524,252 + -3.7
1,524,359 + -1.9
1,524,489 + -0.3
1,524,644 - -0.0
1,525,038 + -0.6
1,525,367 + 12538 mRNA_4170 0.19 -0.8
1,525,522 - 12538 mRNA_4170 0.26 -0.2
1,525,804 + 12538 mRNA_4170 0.39 -0.9
1,525,831 + 12538 mRNA_4170 0.41 -1.4
1,525,949 + 12538 mRNA_4170 0.46 -4.6
1,525,984 - 12538 mRNA_4170 0.48 -3.1
1,525,985 - 12538 mRNA_4170 0.48 +1.0
1,525,996 - 12538 mRNA_4170 0.49 -3.7
1,526,033 - 12538 mRNA_4170 0.50 -2.0
1,526,056 - 12538 mRNA_4170 0.51 -2.2
1,526,197 - 12538 mRNA_4170 0.58 -2.1
1,526,201 - 12538 mRNA_4170 0.58 -1.0
1,526,203 - 12538 mRNA_4170 0.58 -2.1
1,526,212 + 12538 mRNA_4170 0.59 -0.0
1,526,239 + 12538 mRNA_4170 0.60 -2.5
1,526,343 - 12538 mRNA_4170 0.65 -2.7
1,526,354 - 12538 mRNA_4170 0.65 -0.1
1,526,421 - 12538 mRNA_4170 0.69 -0.4
1,526,513 - 12538 mRNA_4170 0.73 -0.5
1,526,522 - 12538 mRNA_4170 0.73 -2.5
1,526,523 - 12538 mRNA_4170 0.74 +0.1
1,526,535 - 12538 mRNA_4170 0.74 -0.9
1,526,551 + 12538 mRNA_4170 0.75 -2.1
1,526,557 - 12538 mRNA_4170 0.75 -1.3
1,526,559 - 12538 mRNA_4170 0.75 -2.3
1,526,559 - 12538 mRNA_4170 0.75 -1.8
1,526,570 + 12538 mRNA_4170 0.76 -1.6
1,526,577 + 12538 mRNA_4170 0.76 -1.9
1,526,598 + 12538 mRNA_4170 0.77 -2.1
1,526,598 - 12538 mRNA_4170 0.77 -0.9
1,526,681 - 12538 mRNA_4170 0.81 -2.8
1,526,705 - 12538 mRNA_4170 0.82 -0.2
1,526,710 - 12538 mRNA_4170 0.82 -3.2
1,526,718 + 12538 mRNA_4170 0.83 -1.0
1,526,722 - 12538 mRNA_4170 0.83 -1.3
1,526,821 + 12538 mRNA_4170 0.88 -0.8
1,526,847 - 12538 mRNA_4170 0.89 -1.0
1,526,986 - -0.2
1,526,992 - -1.7
1,527,025 + -0.6
1,527,292 - +0.8
1,527,298 + +0.2
1,527,365 - -1.6
1,527,450 - -2.5
1,527,579 - -3.4
1,527,643 + -0.5
1,527,708 + -0.1

Or see this region's nucleotide sequence