Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4312

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12679 and 12680 are separated by 390 nucleotides mRNA_4311: 12679 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,871,277 to 1,872,200 12679 mRNA_4312: 12680 - K14802 DRS2, ATP8A phospholipid-transporting ATPase, at 1,872,591 to 1,877,235 12680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,871,611 + 12679 mRNA_4311 0.36 -1.4
1,871,676 + 12679 mRNA_4311 0.43 -1.5
1,871,813 - 12679 mRNA_4311 0.58 -1.2
1,871,853 - 12679 mRNA_4311 0.62 -3.0
1,871,867 - 12679 mRNA_4311 0.64 -1.1
1,871,966 - 12679 mRNA_4311 0.75 +0.1
1,872,127 + -2.0
1,872,223 - -0.6
1,872,223 - -0.2
1,872,277 - -3.0
1,872,314 + +0.2
1,872,421 + -1.5
1,872,573 - -0.1
1,872,647 - -1.1
1,872,885 + -1.0
1,872,920 + -2.8
1,873,047 + -1.0
1,873,143 - 12680 mRNA_4312 0.12 -1.0
1,873,444 - 12680 mRNA_4312 0.18 -2.2
1,873,640 - 12680 mRNA_4312 0.23 -0.9
1,873,801 + 12680 mRNA_4312 0.26 -2.0
1,873,864 + 12680 mRNA_4312 0.27 -2.3
1,873,941 + 12680 mRNA_4312 0.29 +0.8
1,874,358 + 12680 mRNA_4312 0.38 -1.0
1,874,681 + 12680 mRNA_4312 0.45 -1.6
1,874,803 + 12680 mRNA_4312 0.48 -1.6
1,874,945 - 12680 mRNA_4312 0.51 -3.2
1,875,007 - 12680 mRNA_4312 0.52 -0.8
1,875,367 + 12680 mRNA_4312 0.60 -1.9
1,875,383 + 12680 mRNA_4312 0.60 -3.3
1,875,658 - 12680 mRNA_4312 0.66 -1.0
1,875,810 - 12680 mRNA_4312 0.69 -2.7
1,875,815 + 12680 mRNA_4312 0.69 -1.4
1,875,840 + 12680 mRNA_4312 0.70 -2.5
1,875,843 - 12680 mRNA_4312 0.70 -3.2
1,875,860 + 12680 mRNA_4312 0.70 -3.1
1,876,226 + 12680 mRNA_4312 0.78 -3.0
1,876,381 + 12680 mRNA_4312 0.82 -2.3
1,876,726 + 12680 mRNA_4312 0.89 -3.3
1,877,063 + -3.3
1,877,189 + -0.9
1,877,670 + -0.9
1,877,674 + -2.8
1,877,676 - +0.2
1,877,810 - -2.2
1,877,816 + -1.3
1,877,819 - -1.5
1,877,971 + -0.7
1,877,980 - -0.8
1,877,984 + -1.5
1,877,987 - -1.9
1,878,097 + +0.7
1,878,114 - +0.6
1,878,114 - -1.5
1,878,114 - +0.3
1,878,118 - -2.8
1,878,141 - -2.4
1,878,145 + -1.5

Or see this region's nucleotide sequence