Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4359

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12727 and 12728 are separated by 227 nucleotides mRNA_4359: 12727 - Hypothetical Protein, at 194 to 736 12727 mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3,087 12728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + -0.5
34 + -2.4
36 + +1.3
40 + -1.7
106 - -2.1
115 + -2.3
156 - -1.3
162 + -2.4
170 + -2.7
318 + 12727 mRNA_4359 0.23 +0.5
397 + 12727 mRNA_4359 0.37 -0.1
440 + 12727 mRNA_4359 0.45 -2.0
450 + 12727 mRNA_4359 0.47 -2.3
491 + 12727 mRNA_4359 0.55 -0.6
494 - 12727 mRNA_4359 0.55 -0.4
500 - 12727 mRNA_4359 0.56 -1.0
513 + 12727 mRNA_4359 0.59 -2.4
527 - 12727 mRNA_4359 0.61 -1.2
535 + 12727 mRNA_4359 0.63 -0.6
537 - 12727 mRNA_4359 0.63 -0.5
573 - 12727 mRNA_4359 0.70 +0.5
575 - 12727 mRNA_4359 0.70 -1.2
575 - 12727 mRNA_4359 0.70 -1.8
585 + 12727 mRNA_4359 0.72 -2.7
627 - 12727 mRNA_4359 0.80 -1.6
629 + 12727 mRNA_4359 0.80 -0.1
632 + 12727 mRNA_4359 0.81 -1.9
655 + 12727 mRNA_4359 0.85 -1.4
657 - 12727 mRNA_4359 0.85 -1.9
666 + 12727 mRNA_4359 0.87 -4.2
837 + -2.5
866 + +1.1
966 + -2.1
1,080 + -3.0
1,091 + -1.8
1,091 + -0.3
1,092 + -1.1
1,119 + -3.7
1,180 - 12728 mRNA_4360 0.10 -1.8
1,185 - 12728 mRNA_4360 0.10 -1.8
1,186 + 12728 mRNA_4360 0.10 +0.2
1,262 + 12728 mRNA_4360 0.14 -0.6
1,362 + 12728 mRNA_4360 0.19 -1.5
1,365 - 12728 mRNA_4360 0.19 -1.0
1,368 - 12728 mRNA_4360 0.19 -1.5
1,381 + 12728 mRNA_4360 0.20 -0.1
1,539 - 12728 mRNA_4360 0.27 +0.3
1,589 + 12728 mRNA_4360 0.29 -3.3
1,630 + 12728 mRNA_4360 0.31 -1.2
1,688 + 12728 mRNA_4360 0.34 -1.4
1,692 + 12728 mRNA_4360 0.34 +0.3
1,698 - 12728 mRNA_4360 0.35 -1.6
1,699 + 12728 mRNA_4360 0.35 -0.8

Or see this region's nucleotide sequence