Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4368

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12735 and 12736 are separated by 97 nucleotides mRNA_4367: 12735 - K08856 STK16 serine/threonine kinase 16, at 24,559 to 26,572 12735 mRNA_4368: 12736 - K00652 bioF 8-amino-7-oxononanoate synthase, at 26,670 to 28,178 12736

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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25,723 - 12735 mRNA_4367 0.58 -3.1
26,112 - 12735 mRNA_4367 0.77 -1.6
26,284 + 12735 mRNA_4367 0.86 +0.6
26,307 + 12735 mRNA_4367 0.87 -1.9
26,442 + +0.2
26,467 + -1.4
26,605 - -1.7
26,610 + -1.5
28,226 - -1.0
28,232 + -1.0
28,240 + -1.3
28,357 - -3.4
28,362 + -3.4
28,481 + -2.3
28,533 + -2.7
28,680 + -0.5
28,784 - -1.0
28,862 - +0.5
28,867 + -0.4
28,867 + -0.2
28,870 - -1.1
28,878 - +0.9
29,035 - -1.0
29,094 + -0.7
29,103 + -2.9

Or see this region's nucleotide sequence