Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4372

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12740 and 12741 are separated by 204 nucleotides mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990 12741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,732 + -2.3
37,844 - +0.3
37,909 - -1.1
37,948 + -1.5
38,015 - -2.5
38,046 - -2.4
38,193 - -3.0
38,210 + -1.2
38,214 - -2.0
38,230 + -2.5
38,251 + -1.2
38,263 + -1.5
38,283 + -1.1
38,372 + -1.7
38,651 + -1.6
38,942 - 12740 mRNA_4372 0.19 +0.4
38,957 - 12740 mRNA_4372 0.19 -1.2
39,183 - 12740 mRNA_4372 0.28 +0.0
39,190 + 12740 mRNA_4372 0.28 -1.4
39,385 - 12740 mRNA_4372 0.36 -1.1
39,420 - 12740 mRNA_4372 0.37 -0.1
39,474 - 12740 mRNA_4372 0.39 -2.4
39,726 - 12740 mRNA_4372 0.49 -2.7
40,017 - 12740 mRNA_4372 0.60 -1.0
40,418 + 12740 mRNA_4372 0.75 -0.7
40,539 - 12740 mRNA_4372 0.80 -1.0
40,543 - 12740 mRNA_4372 0.80 -3.0
40,856 + -0.3
40,979 + -1.3
41,037 + -0.9
41,124 - -2.6
41,125 - -0.6
41,127 + -3.4
41,129 + +0.2
41,136 - -0.7
41,137 + -2.1
41,137 + -0.1
41,138 - -0.1
41,139 - -0.4
41,139 + -3.1
41,141 - -1.7
41,152 - +0.4
41,154 + -2.2
41,156 - -2.0
41,156 - -0.5
41,157 - -2.5
41,159 + -1.1
41,163 + -0.6
41,163 + -0.7
41,163 - -2.4
41,166 - -2.0
41,166 + -1.6
41,171 + -1.0
41,200 - -0.5
41,222 + -0.7
41,233 - -1.3
41,234 - -2.1
41,254 + +0.1
41,256 - -4.0
41,264 + -0.0
41,269 + -2.7
41,355 + -0.7
41,382 + -3.5
41,382 + -1.4
41,397 + -1.8
41,430 - -2.4
41,490 + 12741 mRNA_4373 0.13 -2.3
41,512 - 12741 mRNA_4373 0.14 -2.0
41,516 - 12741 mRNA_4373 0.14 -0.2
41,783 + 12741 mRNA_4373 0.30 -1.5
41,851 - 12741 mRNA_4373 0.34 -1.5
41,864 + 12741 mRNA_4373 0.35 -0.7
41,870 + 12741 mRNA_4373 0.35 -2.9
41,937 + 12741 mRNA_4373 0.39 -0.6

Or see this region's nucleotide sequence