Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4391

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12758 and 12759 are separated by 884 nucleotides12759 and 12760 overlap by 4 nucleotides mRNA_4390: 12758 - K16261 YAT yeast amino acid transporter, at 76,292 to 78,680 12758 mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188 12759 mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389 12760

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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79,368 + +0.0
79,638 - 12759 mRNA_4391 0.12 +0.2
79,725 - 12759 mRNA_4391 0.26 -3.0
79,792 + 12759 mRNA_4391 0.36 -1.1
80,034 + 12759 mRNA_4391 0.75 -1.3
80,318 + 12760 mRNA_4392 0.11 -0.3
80,617 - 12760 mRNA_4392 0.36 -1.7

Or see this region's nucleotide sequence