Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4413

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12780 and 12781 are separated by 132 nucleotides12781 and 12782 are separated by 725 nucleotides mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120,442 to 126,387 12780 mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126,520 to 129,077 12781 mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129,803 to 130,566 12782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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125,795 - -1.6
125,803 + -2.7
125,806 - -3.1
125,871 + -2.1
126,051 + -0.3
126,051 - -1.9
126,057 + -2.4
126,157 - -2.0
126,240 + -0.5
126,358 + -0.5
126,492 - +1.8
126,506 + -2.7
126,527 + -2.8
126,600 - -2.0
126,817 - 12781 mRNA_4413 0.12 +0.3
126,880 + 12781 mRNA_4413 0.14 +0.8
126,957 + 12781 mRNA_4413 0.17 +0.7
127,029 + 12781 mRNA_4413 0.20 -1.3
127,209 + 12781 mRNA_4413 0.27 -1.3
127,275 + 12781 mRNA_4413 0.30 -2.5
127,525 + 12781 mRNA_4413 0.39 -2.2
127,770 + 12781 mRNA_4413 0.49 -1.0
127,799 + 12781 mRNA_4413 0.50 -1.2
127,841 - 12781 mRNA_4413 0.52 -2.1
127,846 - 12781 mRNA_4413 0.52 -3.3
127,853 - 12781 mRNA_4413 0.52 +0.9
127,988 - 12781 mRNA_4413 0.57 -1.3
128,108 + 12781 mRNA_4413 0.62 +0.2
128,220 - 12781 mRNA_4413 0.66 -0.2
128,460 + 12781 mRNA_4413 0.76 +1.2
128,528 - 12781 mRNA_4413 0.78 -2.1
128,617 - 12781 mRNA_4413 0.82 -1.6
128,665 - 12781 mRNA_4413 0.84 -1.7
128,668 + 12781 mRNA_4413 0.84 -1.6
128,704 + 12781 mRNA_4413 0.85 -0.5
128,873 - -0.5
128,874 - -1.6
129,023 + -2.1
129,214 + -1.9
129,248 + -1.5
129,251 - -1.6
129,425 - -3.0
129,474 + +0.9
129,484 - +1.2
129,484 - -1.9
129,486 - -1.6
129,495 - -0.9
129,502 - -0.5
129,503 + -0.3
129,514 + +0.3
129,521 + -0.6
129,597 + -1.4
129,614 - -2.7
129,624 + -0.8
129,745 + -2.4
129,751 - -0.8
129,771 - -1.2
129,824 - -3.8
129,889 + 12782 mRNA_4414 0.11 -2.4
130,057 + 12782 mRNA_4414 0.33 -1.2

Or see this region's nucleotide sequence