Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4427

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12794 and 12795 are separated by 996 nucleotides12795 and 12796 are separated by 380 nucleotides mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156,367 to 159,071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160,068 to 161,346 12795 mRNA_4428: 12796 - Hypothetical Protein, at 161,727 to 164,031 12796

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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159,074 - -0.1
159,146 - -1.1
159,230 + -1.2
159,596 + -0.0
159,873 + -1.8
159,873 - +1.0
160,010 + -3.3
160,013 - -3.4
160,025 + -0.6
160,104 - +0.1
160,155 + -0.7
160,295 - 12795 mRNA_4427 0.18 -1.1
160,442 + 12795 mRNA_4427 0.29 -0.5
160,858 - 12795 mRNA_4427 0.62 -0.1
160,875 - 12795 mRNA_4427 0.63 -0.9
161,025 + 12795 mRNA_4427 0.75 -1.9
161,139 - 12795 mRNA_4427 0.84 -0.2
161,146 + 12795 mRNA_4427 0.84 -0.1
161,177 - 12795 mRNA_4427 0.87 -3.4
161,348 - -2.2
161,395 - -0.4
161,396 + -2.3
161,753 - -2.5

Or see this region's nucleotide sequence