Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4467

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12834 and 12835 are separated by 236 nucleotides12835 and 12836 are separated by 923 nucleotides mRNA_4466: 12834 - Hypothetical Protein, at 249,067 to 250,434 12834 mRNA_4467: 12835 - Hypothetical Protein, at 250,671 to 251,291 12835 mRNA_4468: 12836 - K11866 STAMBP, AMSH STAM-binding protein, at 252,215 to 253,594 12836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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249,888 + 12834 mRNA_4466 0.60 -0.8
249,925 + 12834 mRNA_4466 0.63 -0.7
250,362 + -2.1
250,510 - -1.6
250,520 - -2.4
250,537 - -1.0
250,621 - -2.0
250,770 + 12835 mRNA_4467 0.16 -1.8
250,895 - 12835 mRNA_4467 0.36 -2.6
250,902 + 12835 mRNA_4467 0.37 -1.0
251,272 + -2.3
251,870 - +0.3
251,901 + -2.9
252,184 + -3.4

Or see this region's nucleotide sequence