Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4468

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12835 and 12836 are separated by 923 nucleotides12836 and 12837 are separated by 302 nucleotides mRNA_4467: 12835 - Hypothetical Protein, at 250,671 to 251,291 12835 mRNA_4468: 12836 - K11866 STAMBP, AMSH STAM-binding protein, at 252,215 to 253,594 12836 mRNA_4469: 12837 - Hypothetical Protein, at 253,897 to 255,507 12837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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251,272 + -2.3
251,870 - +0.3
251,901 + -2.9
252,184 + -3.4
252,431 + 12836 mRNA_4468 0.16 +0.6
252,431 - 12836 mRNA_4468 0.16 +0.0
252,651 + 12836 mRNA_4468 0.32 -2.9
253,518 - -0.1
253,610 + -0.4
253,610 - -1.4
253,649 + -0.6
253,777 + -2.1
253,843 - +0.2
254,575 - 12837 mRNA_4469 0.42 -1.7
254,591 - 12837 mRNA_4469 0.43 -1.4

Or see this region's nucleotide sequence