Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4499

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12866 and 12867 are separated by 142 nucleotides12867 and 12868 are separated by 210 nucleotides mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741 12866 mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323,884 to 327,513 12867 mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327,724 to 330,564 12868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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323,270 + 12866 mRNA_4498 0.59 +0.5
323,316 - 12866 mRNA_4498 0.63 +0.9
323,421 + 12866 mRNA_4498 0.72 -3.1
323,656 + -2.5
324,329 - 12867 mRNA_4499 0.12 -1.7
324,333 - 12867 mRNA_4499 0.12 +0.1
324,393 - 12867 mRNA_4499 0.14 -2.2
324,557 - 12867 mRNA_4499 0.19 -1.8
324,563 + 12867 mRNA_4499 0.19 -2.3
325,142 + 12867 mRNA_4499 0.35 -1.3
325,544 + 12867 mRNA_4499 0.46 -1.6
325,589 - 12867 mRNA_4499 0.47 -2.5
325,687 - 12867 mRNA_4499 0.50 -0.5
325,838 + 12867 mRNA_4499 0.54 -1.8
326,560 + 12867 mRNA_4499 0.74 -2.0
326,561 - 12867 mRNA_4499 0.74 +0.0
327,285 - +0.8
327,422 + -0.3
327,434 - -1.0
327,437 + -0.4
327,447 + -2.5
327,674 + +2.0
327,798 - +0.2
328,363 - 12868 mRNA_4500 0.22 -1.8
328,485 - 12868 mRNA_4500 0.27 -2.6

Or see this region's nucleotide sequence