Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4507

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12874 and 12875 are separated by 258 nucleotides12875 and 12876 are separated by 308 nucleotides mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874 mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136 12876

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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340,149 - 12874 mRNA_4506 0.54 -2.2
340,205 - 12874 mRNA_4506 0.58 -2.1
340,475 - 12874 mRNA_4506 0.77 -1.3
341,187 - -1.8
341,362 + 12875 mRNA_4507 0.18 -1.1
341,592 - 12875 mRNA_4507 0.32 -1.8
341,621 - 12875 mRNA_4507 0.33 -0.5
341,647 + 12875 mRNA_4507 0.35 -1.2
342,351 - 12875 mRNA_4507 0.76 -1.1
342,360 - 12875 mRNA_4507 0.77 -2.2
342,816 + -1.7
342,834 + -0.6
342,864 + -0.1
342,897 + -1.0
342,922 - -0.6
343,154 - -1.0
343,315 - 12876 mRNA_4508 0.12 +0.0
343,593 + 12876 mRNA_4508 0.26 -1.8
343,594 - 12876 mRNA_4508 0.26 -1.0
343,745 + 12876 mRNA_4508 0.33 -3.5

Or see this region's nucleotide sequence