Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4541

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12908 and 12909 are separated by 873 nucleotides mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417,161 to 419,747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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416,246 - -0.7
416,272 - -2.2
416,273 + -2.5
416,284 + -0.6
416,394 - -4.2
416,420 + -1.7
416,428 + -0.8
416,548 - -3.7
416,572 - -0.5
416,733 - -4.4
416,756 - -2.3
416,859 - -0.6
416,868 - -2.8
416,877 + -2.6
416,910 - -0.2
416,914 - -2.5
416,915 + -1.7
416,916 + -1.0
417,561 - 12909 mRNA_4541 0.15 -2.0
417,618 + 12909 mRNA_4541 0.18 -1.0
417,795 - 12909 mRNA_4541 0.25 -4.2
418,091 + 12909 mRNA_4541 0.36 -0.8
418,356 - 12909 mRNA_4541 0.46 -1.2
418,515 + 12909 mRNA_4541 0.52 +0.7
418,655 + 12909 mRNA_4541 0.58 -0.0
418,931 - 12909 mRNA_4541 0.68 -1.6
420,106 + -1.0
420,146 + -1.6
420,262 - -0.8
420,263 + +0.0
420,263 - +0.9
420,263 + -2.8
420,277 - -0.5
420,299 + -2.8
420,377 + -1.2

Or see this region's nucleotide sequence