Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4547

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12915 and 12916 are separated by 380 nucleotides mRNA_4547: 12915 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 432,456 to 433,199 12915 mRNA_4548: 12916 - K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase, at 433,580 to 435,269 12916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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431,927 - -1.8
432,512 + -3.0
432,533 + 12915 mRNA_4547 0.10 -1.3
432,801 - 12915 mRNA_4547 0.46 -1.1
433,111 - 12915 mRNA_4547 0.88 -1.3
433,145 + -1.2
433,258 - -0.3
433,270 - -1.1
433,699 - -1.9
433,836 - 12916 mRNA_4548 0.15 -0.7
433,836 - 12916 mRNA_4548 0.15 -0.4
433,857 + 12916 mRNA_4548 0.16 +0.5
434,009 - 12916 mRNA_4548 0.25 -2.8
434,157 + 12916 mRNA_4548 0.34 -3.4

Or see this region's nucleotide sequence