Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4564

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12931 and 12932 are separated by 675 nucleotides12932 and 12933 are separated by 478 nucleotides mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469,300 to 472,637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473,313 to 477,203 12932 mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477,682 to 479,259 12933

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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472,447 + -0.3
472,696 - -0.4
472,715 + +0.1
472,734 + -1.3
473,019 + -1.6
473,020 - -1.7
473,027 - -1.3
473,035 - -2.2
473,048 + -1.7
473,057 - -0.6
473,149 + +0.3
473,157 + -2.2
473,172 + -2.5
473,174 + -0.4
473,175 - +1.2
473,176 + -3.3
473,176 - -0.6
473,180 - -0.9
473,181 + -1.3
473,187 + -0.4
473,192 - -2.1
473,193 + -0.4
473,196 + -1.3
473,199 + -0.3
473,213 - -0.4
473,241 + -1.2
473,243 - -3.5
473,317 - -0.9
473,346 + -2.2
473,363 - -0.5
473,366 + -2.3
473,376 + -2.7
473,521 + -1.6
473,666 + -0.5
473,820 - 12932 mRNA_4564 0.13 -2.9
473,949 + 12932 mRNA_4564 0.16 -0.6
473,987 + 12932 mRNA_4564 0.17 -1.1
474,006 + 12932 mRNA_4564 0.18 -2.4
474,549 + 12932 mRNA_4564 0.32 +0.9
474,585 - 12932 mRNA_4564 0.33 +0.2
474,657 - 12932 mRNA_4564 0.35 -1.1
475,011 - 12932 mRNA_4564 0.44 -2.7
475,081 - 12932 mRNA_4564 0.45 -3.9
475,141 + 12932 mRNA_4564 0.47 -2.0
475,285 - 12932 mRNA_4564 0.51 -1.8
475,852 + 12932 mRNA_4564 0.65 -2.3
476,278 - 12932 mRNA_4564 0.76 -1.6
476,361 + 12932 mRNA_4564 0.78 -0.9
476,387 - 12932 mRNA_4564 0.79 -0.1
476,418 + 12932 mRNA_4564 0.80 -0.1
476,867 - -3.0
477,024 - -1.2
477,027 + -0.9
477,031 - -2.3
477,160 - +2.3
477,191 + -2.2
477,203 - -0.7
477,203 - -0.7
477,294 - -0.9
477,335 - -2.3
477,344 + -2.8
477,348 + -3.9
477,448 + -1.4
477,461 - -0.5
477,466 - -0.1
477,482 - +0.6
477,483 - -2.0
477,615 - +0.4
477,621 - -3.0
477,639 + -2.9
477,658 - -3.1
477,788 + -1.0
477,933 - 12933 mRNA_4565 0.16 -1.5
477,965 - 12933 mRNA_4565 0.18 -0.1
478,087 + 12933 mRNA_4565 0.26 +0.5
478,202 - 12933 mRNA_4565 0.33 -2.8

Or see this region's nucleotide sequence