Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4572

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12939 and 12940 are separated by 111 nucleotides12940 and 12941 are separated by 123 nucleotides mRNA_4571: 12939 - KOG4419 5' nucleotidase, at 493,411 to 495,654 12939 mRNA_4572: 12940 - K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1, at 495,766 to 497,109 12940 mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989 12941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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495,365 + 12939 mRNA_4571 0.87 -0.3
495,369 - 12939 mRNA_4571 0.87 -1.4
497,021 - -2.3
497,024 + -2.2
497,124 - -2.0
497,150 + -0.6
497,167 - -1.9

Or see this region's nucleotide sequence