Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4586

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12953 and 12954 are separated by 233 nucleotides mRNA_4585: 12953 - SUPERFAMILY--SSF103473, at 526,497 to 528,503 12953 mRNA_4586: 12954 - K16075 MRS2, MFM1 magnesium transporter, at 528,737 to 530,080 12954

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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528,611 - -3.2
528,647 + -2.5
528,652 + -0.6
528,899 - 12954 mRNA_4586 0.12 -2.3
528,906 + 12954 mRNA_4586 0.13 -0.6
529,200 + 12954 mRNA_4586 0.34 +0.2
529,335 + 12954 mRNA_4586 0.44 -3.3
529,666 + 12954 mRNA_4586 0.69 +0.4
529,708 - 12954 mRNA_4586 0.72 -1.5
529,759 - 12954 mRNA_4586 0.76 -3.0
529,905 - 12954 mRNA_4586 0.87 -1.9
530,342 + -1.8
530,346 - -2.7
530,484 + -1.7
530,533 + -2.0
530,637 - +0.5
530,638 - -3.0
530,655 - +0.9
530,792 - -1.8
530,819 + -0.2

Or see this region's nucleotide sequence