Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4595

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12962 and 12963 are separated by 556 nucleotides12963 and 12964 are separated by 244 nucleotides mRNA_4594: 12962 - K19589 N6AMT1 release factor glutamine methyltransferase, at 548,328 to 549,291 12962 mRNA_4595: 12963 - KOG2186 Cell growth-regulating nucleolar protein, at 549,848 to 550,552 12963 mRNA_4596: 12964 - KOG4009 NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW, at 550,797 to 551,736 12964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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549,461 + -2.4
549,463 + +0.5
549,471 - -1.8
549,492 + -1.5
549,600 + -0.6
549,606 + -2.2
549,642 + -1.6
549,730 - -2.1
549,898 - -1.6
550,222 - 12963 mRNA_4595 0.53 -0.5

Or see this region's nucleotide sequence