Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4605

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12972 and 12973 are separated by 238 nucleotides12973 and 12974 are separated by 261 nucleotides mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987 12972 mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633 12973 mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183 12974

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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568,014 - -2.6
568,724 - 12973 mRNA_4605 0.35 -2.7
569,009 + 12973 mRNA_4605 0.56 +0.3
569,165 - 12973 mRNA_4605 0.67 -3.1
570,031 - 12974 mRNA_4606 0.11 -1.4
570,588 - 12974 mRNA_4606 0.54 -1.6
570,604 - 12974 mRNA_4606 0.55 -1.3

Or see this region's nucleotide sequence