Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4619

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12986 and 12987 are separated by 435 nucleotides mRNA_4618: 12986 - Hypothetical Protein, at 614,966 to 615,210 12986 mRNA_4619: 12987 - KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1, at 615,646 to 616,230 12987

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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614,864 + +0.2
614,883 + -2.2
614,886 - +0.6
614,893 + -0.4
614,901 + -3.3
614,907 + +0.8
615,177 - 12986 mRNA_4618 0.86 -4.0
615,929 + 12987 mRNA_4619 0.48 -0.4
616,191 + -0.4
616,191 + -0.6
616,634 - -2.7
616,658 - -2.7
616,845 + -1.0

Or see this region's nucleotide sequence