Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4620

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12988 and 12989 are separated by 124 nucleotides mRNA_4620: 12988 - K05293 PIGU phosphatidylinositol glycan, class U, at 617,665 to 619,015 12988 mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619,140 to 621,311 12989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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616,845 + -1.0
617,292 + -0.7
619,035 - -0.8
619,036 - -1.9
619,053 - -3.9
619,068 - +0.3
619,072 + -0.6
619,078 + +1.6
619,209 - -1.4
619,230 + -1.8
619,785 + 12989 mRNA_4621 0.30 -2.1
619,948 + 12989 mRNA_4621 0.37 +2.1

Or see this region's nucleotide sequence