Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4622

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12989 and 12990 are separated by 324 nucleotides12990 and 12991 are separated by 373 nucleotides mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619,140 to 621,311 12989 mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621,636 to 624,863 12990 mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203 12991

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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621,290 + -0.2
621,563 - -1.3
621,564 + -4.1
621,578 + -2.4
621,602 + -1.0
621,877 + -1.9
621,884 - -2.9
621,897 - -2.6
621,898 - -0.3
621,902 - -1.2
621,907 + -1.2
622,444 - 12990 mRNA_4622 0.25 -0.3
622,601 - 12990 mRNA_4622 0.30 -1.1
623,060 - 12990 mRNA_4622 0.44 +0.0
623,761 + 12990 mRNA_4622 0.66 -2.9
625,028 + -2.1
625,155 - -0.2
625,579 + 12991 mRNA_4623 0.12 -0.5
625,735 + 12991 mRNA_4623 0.17 -1.4

Or see this region's nucleotide sequence