Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4623

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12990 and 12991 are separated by 373 nucleotides12991 and 12992 are separated by 297 nucleotides mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621,636 to 624,863 12990 mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203 12991 mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051 12992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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625,028 + -2.1
625,155 - -0.2
625,579 + 12991 mRNA_4623 0.12 -0.5
625,735 + 12991 mRNA_4623 0.17 -1.4
626,067 + 12991 mRNA_4623 0.28 -3.5
626,313 + 12991 mRNA_4623 0.36 -0.9
626,515 + 12991 mRNA_4623 0.43 -1.6
626,622 - 12991 mRNA_4623 0.47 -0.1
627,362 + 12991 mRNA_4623 0.72 -0.4
627,372 - 12991 mRNA_4623 0.72 -0.4
628,098 + -0.7
628,566 + 12992 mRNA_4624 0.12 -2.2
628,844 + 12992 mRNA_4624 0.62 -1.0

Or see this region's nucleotide sequence