Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4631

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12998 and 12999 are separated by 784 nucleotides12999 and 13000 are separated by 342 nucleotides mRNA_4630: 12998 - Hypothetical Protein, at 646,007 to 648,438 12998 mRNA_4631: 12999 - SUPERFAMILY--SSF103506, at 649,223 to 651,329 12999 mRNA_4632: 13000 - K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2, at 651,672 to 652,888 13000

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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648,607 + -0.7
648,652 - -2.2
648,891 + -0.3
649,178 - -0.7
649,515 + 12999 mRNA_4631 0.14 -2.2
649,631 + 12999 mRNA_4631 0.19 -0.9
649,759 - 12999 mRNA_4631 0.25 +0.7
649,865 - 12999 mRNA_4631 0.30 -3.3
649,894 + 12999 mRNA_4631 0.32 -1.9
650,211 + 12999 mRNA_4631 0.47 +0.2
650,247 - 12999 mRNA_4631 0.49 -1.8
650,281 + 12999 mRNA_4631 0.50 -1.8
650,358 - 12999 mRNA_4631 0.54 -0.4
650,644 - 12999 mRNA_4631 0.67 -2.4
650,661 - 12999 mRNA_4631 0.68 -1.5
650,684 + 12999 mRNA_4631 0.69 -2.2
651,236 - -1.3
651,356 + -0.9
651,385 + -2.5
651,528 - -2.0
651,536 - -0.2
651,570 + -0.2
652,278 + 13000 mRNA_4632 0.50 -0.4
652,295 + 13000 mRNA_4632 0.51 -1.5

Or see this region's nucleotide sequence