Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4632

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12999 and 13000 are separated by 342 nucleotides13000 and 13001 are separated by 99 nucleotides mRNA_4631: 12999 - SUPERFAMILY--SSF103506, at 649,223 to 651,329 12999 mRNA_4632: 13000 - K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2, at 651,672 to 652,888 13000 mRNA_4633: 13001 - K00521 E1.16.1.7 ferric-chelate reductase, at 652,988 to 655,146 13001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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650,684 + 12999 mRNA_4631 0.69 -2.2
651,236 - -1.3
651,356 + -0.9
651,385 + -2.5
651,528 - -2.0
651,536 - -0.2
651,570 + -0.2
652,278 + 13000 mRNA_4632 0.50 -0.4
652,295 + 13000 mRNA_4632 0.51 -1.5
653,307 - 13001 mRNA_4633 0.15 -2.2
653,314 + 13001 mRNA_4633 0.15 -3.7

Or see this region's nucleotide sequence