Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4662

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13029 and 13030 are separated by 340 nucleotides13030 and 13031 are separated by 723 nucleotides mRNA_4661: 13029 - K20180 VPS16 vacuolar protein sorting-associated protein 16, at 716,633 to 720,333 13029 mRNA_4662: 13030 - K20352 TMED10, ERV25 p24 family protein delta-1, at 720,674 to 721,650 13030 mRNA_4663: 13031 - K18619 CORO7 coronin-7, at 722,374 to 726,218 13031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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720,434 - -0.6
720,454 - -1.4
720,466 + -3.2
720,472 - -2.5
720,734 + -3.1
720,885 + 13030 mRNA_4662 0.22 -2.8
721,347 + 13030 mRNA_4662 0.69 -2.8
721,562 - -2.8
721,600 - -1.7
721,907 + -3.9
722,039 + -1.1
722,039 - -0.9
722,180 - -1.8
722,182 - -3.2
722,217 - -2.0
722,314 - -2.2
722,631 + -0.6

Or see this region's nucleotide sequence