Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4772

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13139 and 13140 are separated by 358 nucleotides13140 and 13141 are separated by 340 nucleotides mRNA_4771: 13139 - K20062 ART4_5_7 arrestin-related trafficking adapter 4/5/7, at 977,972 to 980,923 13139 mRNA_4772: 13140 - K01874 MARS, metG methionyl-tRNA synthetase, at 981,282 to 984,075 13140 mRNA_4773: 13141 - KOG0254 Predicted transporter (major facilitator superfamily), at 984,416 to 986,874 13141

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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980,946 - -1.0
983,817 + -1.8
984,063 + -1.0
984,100 + -5.1
984,187 - -3.2
984,201 - -1.4
984,223 - -1.7
984,224 - +0.5
984,225 + -1.9
984,249 - -1.8
984,251 + +0.1
984,251 + -1.8
984,257 - +1.3
984,412 - -0.9
984,517 - -2.6
984,552 - +0.4
984,676 - 13141 mRNA_4773 0.11 -2.3
984,713 - 13141 mRNA_4773 0.12 -2.6

Or see this region's nucleotide sequence