Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4795

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13162 and 13163 are separated by 353 nucleotides mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225 13162 mRNA_4795: 13163 - Hypothetical Protein, at 1,028,579 to 1,029,667 13163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,027,796 + 13162 mRNA_4794 0.23 -2.6
1,028,068 + 13162 mRNA_4794 0.72 -1.4
1,028,114 + 13162 mRNA_4794 0.80 -3.0
1,028,518 - -2.5
1,028,524 + -1.2
1,028,527 - -2.0
1,028,698 - 13163 mRNA_4795 0.11 -2.7
1,028,965 - 13163 mRNA_4795 0.35 -0.4
1,029,098 + 13163 mRNA_4795 0.48 -1.5
1,029,162 + 13163 mRNA_4795 0.54 -1.7
1,029,383 - 13163 mRNA_4795 0.74 -0.5
1,029,402 - 13163 mRNA_4795 0.76 -1.7
1,030,055 - -3.1
1,030,166 + +0.0
1,030,269 - -0.3
1,030,320 - -1.2
1,030,460 + -0.7

Or see this region's nucleotide sequence