Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4837

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13204 and 13205 are separated by 16 nucleotides mRNA_4836: 13204 - BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1..., at 1,116,510 to 1,117,726 13204 mRNA_4837: 13205 - K20872 NEK2 NIMA (never in mitosis gene a)-related kinase 2, at 1,117,743 to 1,117,911 13205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,116,922 + 13204 mRNA_4836 0.34 -1.2
1,117,150 + 13204 mRNA_4836 0.53 -3.3
1,117,689 - -1.5
1,117,998 + +0.3
1,117,998 + -0.2
1,118,302 - -2.5
1,118,602 + +1.2

Or see this region's nucleotide sequence