Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4868

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13235 and 13236 are separated by 220 nucleotides13236 and 13237 are separated by 543 nucleotides mRNA_4867: 13235 - K06634 CCNH cyclin H, at 1,177,691 to 1,179,183 13235 mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1,179,404 to 1,180,039 13236 mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1,180,583 to 1,182,754 13237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,179,240 + -3.0
1,179,849 + 13236 mRNA_4868 0.70 -2.2
1,179,989 + -0.0
1,180,123 - -0.7
1,180,256 - -2.2
1,180,257 + -1.9
1,180,263 + -2.5
1,180,287 + -2.4
1,180,417 - -0.2
1,180,422 + -1.9
1,180,428 + -2.5
1,180,430 - -0.2
1,180,570 - +0.1
1,180,727 - -1.3
1,180,740 + +0.1
1,180,856 + 13237 mRNA_4869 0.13 -0.4

Or see this region's nucleotide sequence