Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4875

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13242 and 13243 are separated by 118 nucleotides13243 and 13244 are separated by 797 nucleotides mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1,192,452 to 1,195,364 13242 mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,195,483 to 1,197,426 13243 mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1,198,224 to 1,200,676 13244

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,194,700 - 13242 mRNA_4874 0.77 -3.1
1,195,141 + -0.8
1,195,308 - -1.6
1,195,325 + +0.1
1,195,326 + -1.0
1,196,199 + 13243 mRNA_4875 0.37 -2.0
1,196,201 + 13243 mRNA_4875 0.37 -1.7
1,196,446 - 13243 mRNA_4875 0.50 -0.0
1,196,492 - 13243 mRNA_4875 0.52 -1.3
1,196,640 - 13243 mRNA_4875 0.60 -1.4
1,197,503 - -1.3
1,197,639 + -1.5
1,197,642 - -0.2
1,197,655 + -3.0
1,197,782 - +0.2
1,197,792 - -1.4
1,197,802 - -3.6
1,197,937 - -2.0
1,197,951 + +0.2
1,197,955 - -2.5
1,197,974 + -2.5

Or see this region's nucleotide sequence