Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4896

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4896: 13264 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,246,200 to 1,251,399 13264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,245,372 - -1.8
1,245,388 + -1.0
1,245,409 + -0.1
1,245,414 + -0.3
1,245,419 + -1.9
1,245,543 - -2.2
1,245,549 + -0.8
1,245,698 + -1.4
1,245,702 - +0.1
1,245,703 + +0.1
1,245,715 + -2.7
1,245,856 + -0.9
1,245,993 + -1.1
1,246,447 + -0.2
1,246,576 - -0.5
1,246,590 - -0.4
1,246,738 - 13264 mRNA_4896 0.10 -3.7
1,246,738 - 13264 mRNA_4896 0.10 +0.5
1,247,028 + 13264 mRNA_4896 0.16 -2.5
1,247,610 - 13264 mRNA_4896 0.27 -1.9
1,247,765 - 13264 mRNA_4896 0.30 +0.2
1,247,769 + 13264 mRNA_4896 0.30 -1.9
1,247,872 - 13264 mRNA_4896 0.32 +2.2
1,248,016 - 13264 mRNA_4896 0.35 +0.2
1,248,080 + 13264 mRNA_4896 0.36 -1.2
1,248,478 - 13264 mRNA_4896 0.44 -0.5
1,248,797 + 13264 mRNA_4896 0.50 -0.7
1,249,376 + 13264 mRNA_4896 0.61 -0.7
1,249,652 + 13264 mRNA_4896 0.66 -0.8
1,249,699 + 13264 mRNA_4896 0.67 -0.0
1,251,116 - -0.1
1,251,260 - +0.2
1,251,373 + -2.1
1,251,680 - -1.4
1,251,979 - -0.6
1,251,985 + -1.2
1,252,129 - +0.0
1,252,284 - -1.5
1,252,300 + -3.0

Or see this region's nucleotide sequence