Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4910

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13277 and 13278 are separated by 350 nucleotides13278 and 13279 are separated by 300 nucleotides mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1,281,980 to 1,284,451 13277 mRNA_4910: 13278 - K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13, at 1,284,802 to 1,288,001 13278 mRNA_4911: 13279 - BLAST pre-mrna-splicing factor cwc22 [Moniliophthora ro..., at 1,288,302 to 1,289,594 13279

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,284,103 - 13277 mRNA_4909 0.86 -2.6
1,284,111 + 13277 mRNA_4909 0.86 -0.8
1,284,112 - 13277 mRNA_4909 0.86 -1.2
1,284,656 - -2.3
1,284,657 - -1.9
1,284,707 - -0.4
1,284,826 - -1.5
1,285,372 + 13278 mRNA_4910 0.18 -1.8
1,288,055 + -3.3
1,288,179 - -2.5
1,288,201 - -0.3
1,288,206 - -0.3
1,288,329 - -1.2
1,288,669 + 13279 mRNA_4911 0.28 -0.5
1,288,810 - 13279 mRNA_4911 0.39 -1.9

Or see this region's nucleotide sequence