Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4924

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13291 and 13292 are separated by 124 nucleotides13292 and 13293 are separated by 286 nucleotides mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1,320,698 to 1,323,090 13291 mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1,323,215 to 1,324,561 13292 mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229 13293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,322,752 - 13291 mRNA_4923 0.86 +1.5
1,323,180 + -0.1
1,323,458 - 13292 mRNA_4924 0.18 +1.7
1,323,465 + 13292 mRNA_4924 0.19 -1.1
1,323,590 - 13292 mRNA_4924 0.28 -4.4
1,323,608 + 13292 mRNA_4924 0.29 -1.0
1,323,923 - 13292 mRNA_4924 0.53 -4.0
1,324,200 - 13292 mRNA_4924 0.73 -2.4
1,324,764 + -1.2
1,324,786 - -0.2
1,324,812 + -2.0
1,325,224 - 13293 mRNA_4925 0.11 -2.1
1,325,385 - 13293 mRNA_4925 0.16 +0.9

Or see this region's nucleotide sequence