Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4968

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13336 and 13337 are separated by 81 nucleotides mRNA_4968: 13336 - KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion), at 1,432,474 to 1,435,003 13336 mRNA_4969: 13337 - K20456 OSBP oxysterol-binding protein 1, at 1,435,085 to 1,439,408 13337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,431,547 - -3.2
1,431,996 + -2.1
1,432,106 + +2.3
1,432,242 - -3.9
1,432,243 + -1.3
1,432,268 + -0.7
1,432,398 - -3.0
1,432,399 - -0.5
1,432,401 + -1.0
1,432,415 - -3.5
1,432,519 + -2.4
1,432,568 + -0.8
1,432,700 + -1.2
1,432,707 + -3.1
1,432,856 + 13336 mRNA_4968 0.15 -1.6
1,432,956 + 13336 mRNA_4968 0.19 +0.6
1,433,410 - 13336 mRNA_4968 0.37 -1.8
1,433,430 - 13336 mRNA_4968 0.38 -3.2
1,433,769 + 13336 mRNA_4968 0.51 +1.0
1,434,237 - 13336 mRNA_4968 0.70 -2.0
1,434,656 - 13336 mRNA_4968 0.86 -0.9
1,434,701 + 13336 mRNA_4968 0.88 -2.7
1,434,840 - -0.5
1,434,956 + -1.9
1,435,405 - -1.3
1,435,812 + 13337 mRNA_4969 0.17 -0.4
1,435,884 + 13337 mRNA_4969 0.18 -1.8
1,435,982 - 13337 mRNA_4969 0.21 -1.8

Or see this region's nucleotide sequence