Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4974

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13341 and 13342 are separated by 346 nucleotides13342 and 13343 are separated by 350 nucleotides mRNA_4973: 13341 - K18466 VPS26 vacuolar protein sorting-associated protein 26, at 1,451,904 to 1,453,549 13341 mRNA_4974: 13342 - Hypothetical Protein, at 1,453,896 to 1,454,599 13342 mRNA_4975: 13343 - Hypothetical Protein, at 1,454,950 to 1,456,101 13343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,453,031 - 13341 mRNA_4973 0.68 +0.2
1,453,866 - -3.3
1,454,164 + 13342 mRNA_4974 0.38 -0.2
1,454,169 + 13342 mRNA_4974 0.39 -1.3
1,454,186 + 13342 mRNA_4974 0.41 -0.9
1,454,195 - 13342 mRNA_4974 0.42 -0.7
1,454,219 - 13342 mRNA_4974 0.46 -1.5
1,454,285 + 13342 mRNA_4974 0.55 -0.9
1,454,341 - 13342 mRNA_4974 0.63 -1.5
1,454,354 - 13342 mRNA_4974 0.65 -0.0
1,454,381 - 13342 mRNA_4974 0.69 -2.1
1,454,407 + 13342 mRNA_4974 0.73 +0.5
1,454,479 - 13342 mRNA_4974 0.83 -2.8
1,454,498 - 13342 mRNA_4974 0.86 -3.0
1,454,504 - 13342 mRNA_4974 0.86 -2.0
1,454,505 + 13342 mRNA_4974 0.87 -2.8
1,454,507 - 13342 mRNA_4974 0.87 -0.2
1,454,512 + 13342 mRNA_4974 0.88 +0.1
1,454,522 - 13342 mRNA_4974 0.89 +0.2
1,454,531 + -4.4
1,454,563 - -2.0
1,454,671 - -1.0
1,454,672 - -4.1
1,454,676 - -2.5
1,454,695 + +0.0
1,454,713 + -1.6
1,454,769 - -2.8
1,454,772 - -3.4
1,454,773 - -0.5
1,454,776 - -0.0
1,454,776 - -1.0
1,454,778 - -0.9
1,454,779 + -0.9
1,454,785 + -1.8
1,454,788 - -0.5
1,454,794 + -1.3
1,454,804 - +0.2
1,454,806 + -2.6
1,454,807 - -1.6
1,454,815 - -3.3
1,454,827 - -2.8
1,454,828 + -0.6
1,454,832 - -0.1
1,454,832 + -1.0
1,454,833 + -1.3
1,454,901 - -2.0
1,454,965 + -3.2
1,454,976 + -2.2
1,454,981 - -0.5
1,455,171 - 13343 mRNA_4975 0.19 +0.1
1,455,274 + 13343 mRNA_4975 0.28 +0.0
1,455,395 + 13343 mRNA_4975 0.39 -0.8
1,455,586 + 13343 mRNA_4975 0.55 -0.2

Or see this region's nucleotide sequence