Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5006

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13373 and 13374 are separated by 269 nucleotides13374 and 13375 are separated by 296 nucleotides mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1,522,802 to 1,524,731 13373 mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1,525,001 to 1,528,336 13374 mRNA_5007: 13375 - Hypothetical Protein, at 1,528,633 to 1,529,200 13375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,524,802 - -1.6
1,524,813 + -2.5
1,524,945 - +0.4
1,525,098 - -0.7
1,525,109 + -2.1
1,525,125 + -1.4
1,525,264 - -1.1
1,525,462 - 13374 mRNA_5006 0.14 -2.0
1,525,812 + 13374 mRNA_5006 0.24 -1.7
1,525,859 + 13374 mRNA_5006 0.26 -1.3
1,525,869 - 13374 mRNA_5006 0.26 -0.9
1,526,438 + 13374 mRNA_5006 0.43 -0.9
1,526,469 - 13374 mRNA_5006 0.44 -2.0
1,526,476 + 13374 mRNA_5006 0.44 -0.4
1,526,581 + 13374 mRNA_5006 0.47 +0.6
1,526,915 + 13374 mRNA_5006 0.57 -0.8
1,527,056 + 13374 mRNA_5006 0.62 -1.7
1,527,351 - 13374 mRNA_5006 0.70 -0.9
1,527,550 - 13374 mRNA_5006 0.76 -0.5
1,527,654 + 13374 mRNA_5006 0.80 -0.7
1,527,951 - 13374 mRNA_5006 0.88 -2.9
1,528,028 - -1.5
1,528,081 - -1.6
1,528,219 + -0.3
1,528,244 + -1.4
1,528,387 - -2.6
1,528,390 + -1.3
1,528,392 - -1.3
1,528,395 + -0.8
1,528,395 + -0.9
1,528,397 - -0.0
1,528,407 - -1.5
1,528,412 + -0.3
1,528,417 - -2.5
1,528,444 - +1.2
1,528,540 - -0.6
1,528,554 + -1.2
1,528,565 + -3.4
1,528,568 - -3.8
1,528,614 - -2.3
1,528,622 + -4.1
1,528,727 - 13375 mRNA_5007 0.17 +1.3
1,528,740 + 13375 mRNA_5007 0.19 -1.8
1,528,743 + 13375 mRNA_5007 0.19 -0.1
1,528,743 - 13375 mRNA_5007 0.19 -1.1
1,528,745 - 13375 mRNA_5007 0.20 -0.5
1,528,747 + 13375 mRNA_5007 0.20 -2.2
1,528,879 - 13375 mRNA_5007 0.43 -2.2
1,529,016 - 13375 mRNA_5007 0.67 +0.5
1,529,038 - 13375 mRNA_5007 0.71 -0.9
1,529,040 - 13375 mRNA_5007 0.72 -0.6
1,529,041 + 13375 mRNA_5007 0.72 -1.8

Or see this region's nucleotide sequence