Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5022

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13389 and 13390 are separated by 241 nucleotides13390 and 13391 are separated by 240 nucleotides mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1,569,492 to 1,571,260 13389 mRNA_5022: 13390 - Hypothetical Protein, at 1,571,502 to 1,572,574 13390 mRNA_5023: 13391 - K17866 DPH2 diphthamide biosynthesis protein 2, at 1,572,815 to 1,575,164 13391

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,570,694 + 13389 mRNA_5021 0.68 -0.9
1,570,969 + 13389 mRNA_5021 0.83 -3.4
1,571,140 - -1.4
1,571,746 - 13390 mRNA_5022 0.23 -2.5
1,571,842 - 13390 mRNA_5022 0.32 -1.6
1,571,863 + 13390 mRNA_5022 0.34 -1.2
1,571,863 + 13390 mRNA_5022 0.34 -1.5
1,572,156 - 13390 mRNA_5022 0.61 +0.8

Or see this region's nucleotide sequence