Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5160

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13527 and 13528 are separated by 545 nucleotides mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543 13527 mRNA_5160: 13528 - Hypothetical Protein, at 43,089 to 43,847 13528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,119 + 13527 mRNA_5159 0.63 -2.8
42,256 + 13527 mRNA_5159 0.75 -1.9
42,275 + 13527 mRNA_5159 0.77 -1.6
42,286 + 13527 mRNA_5159 0.78 +0.4
42,296 + 13527 mRNA_5159 0.79 -3.2
42,320 - 13527 mRNA_5159 0.81 -0.2
42,555 + -3.0
42,721 - -2.7
43,332 - 13528 mRNA_5160 0.32 -1.4
43,503 - 13528 mRNA_5160 0.55 -0.9
43,550 + 13528 mRNA_5160 0.61 -0.9
43,749 - 13528 mRNA_5160 0.87 -1.1
43,918 + -1.1
44,101 + -3.5
44,201 + -0.7
44,489 + -2.1
44,503 + -0.4
44,588 + -1.1
44,746 - +1.6
44,772 - +0.3
44,822 + -0.1
44,823 + -0.1

Or see this region's nucleotide sequence