Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5172

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5172: 13540 - BLAST similar to An11g07040 [Aspergillus kawachii IFO 4308], at 70,106 to 71,183 13540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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69,193 - -1.3
69,193 - -1.3
69,200 + -1.1
69,208 - -1.7
69,327 - -0.6
69,331 - -1.5
69,333 - -1.9
69,337 - -2.4
69,338 + -1.0
69,351 + -0.2
69,355 + -2.0
69,462 - -3.4
69,476 + -0.6
69,499 + +0.7
69,500 - -3.1
69,502 + -0.0
69,503 - -0.8
69,511 + -1.6
69,519 + +0.0
69,643 - -2.7
69,643 + -2.5
69,643 + -3.5
69,645 + -2.0
69,646 - +1.6
69,650 - -2.8
69,652 + -0.2
69,652 + +0.2
69,653 + -0.6
69,653 + -1.1
69,656 + -1.1
69,676 + -0.7
69,690 + -0.5
69,694 + -0.0
69,696 + -0.7
69,698 - +0.6
69,710 - -1.8
69,730 - -0.2
69,732 + -3.4
69,734 + -1.9
69,737 - -0.7
69,742 + -1.1
69,746 + +1.0
69,749 + -1.5
69,761 + +2.0
69,762 + -1.9
69,770 - -0.5
69,779 - +0.1
69,782 + -3.2
69,788 + -0.6
69,840 - -2.1
69,853 - -3.0
69,864 + -0.9
70,124 + -1.0
70,141 + +0.6
70,147 - -1.5
70,148 + -0.2
70,161 + -0.9
70,163 - +0.4
70,164 + -4.1
70,274 - 13540 mRNA_5172 0.16 -1.6
70,278 - 13540 mRNA_5172 0.16 +1.8
70,323 - 13540 mRNA_5172 0.20 -2.5
70,427 - 13540 mRNA_5172 0.30 -1.4
70,457 - 13540 mRNA_5172 0.33 +0.1
70,508 + 13540 mRNA_5172 0.37 -0.4
70,550 + 13540 mRNA_5172 0.41 +0.7
70,551 - 13540 mRNA_5172 0.41 -0.1
70,554 + 13540 mRNA_5172 0.42 -3.3
70,558 - 13540 mRNA_5172 0.42 -0.2
70,603 - 13540 mRNA_5172 0.46 +0.6
70,621 - 13540 mRNA_5172 0.48 +0.1
70,621 - 13540 mRNA_5172 0.48 -2.4
70,687 - 13540 mRNA_5172 0.54 -2.4
70,702 - 13540 mRNA_5172 0.55 -1.8
70,709 + 13540 mRNA_5172 0.56 +0.6
70,762 - 13540 mRNA_5172 0.61 -1.7
70,797 + 13540 mRNA_5172 0.64 -1.1
70,811 + 13540 mRNA_5172 0.65 -0.1
70,825 - 13540 mRNA_5172 0.67 -0.3
70,831 + 13540 mRNA_5172 0.67 +0.1
70,842 - 13540 mRNA_5172 0.68 -1.5
70,863 + 13540 mRNA_5172 0.70 -2.8
70,863 - 13540 mRNA_5172 0.70 -0.8
70,863 + 13540 mRNA_5172 0.70 -2.1
70,872 - 13540 mRNA_5172 0.71 -1.0
70,876 - 13540 mRNA_5172 0.71 -1.0
70,876 + 13540 mRNA_5172 0.71 -2.3
70,877 + 13540 mRNA_5172 0.72 -2.0
70,880 + 13540 mRNA_5172 0.72 -2.6
70,887 + 13540 mRNA_5172 0.72 -1.0
70,890 - 13540 mRNA_5172 0.73 -3.3
70,894 - 13540 mRNA_5172 0.73 +0.3
70,895 + 13540 mRNA_5172 0.73 -1.4
70,896 - 13540 mRNA_5172 0.73 -3.4
70,896 - 13540 mRNA_5172 0.73 +0.7
70,898 + 13540 mRNA_5172 0.73 -1.9
70,919 - 13540 mRNA_5172 0.75 -2.0
70,928 + 13540 mRNA_5172 0.76 -0.1
70,932 + 13540 mRNA_5172 0.77 -2.7
70,935 + 13540 mRNA_5172 0.77 +0.1
70,941 - 13540 mRNA_5172 0.77 -1.0
70,954 + 13540 mRNA_5172 0.79 -2.7
70,993 - 13540 mRNA_5172 0.82 -1.8
70,997 - 13540 mRNA_5172 0.83 -0.6
71,023 + 13540 mRNA_5172 0.85 -2.1
71,024 + 13540 mRNA_5172 0.85 -0.1
71,038 + 13540 mRNA_5172 0.86 -2.1
71,042 + 13540 mRNA_5172 0.87 -2.8
71,042 + 13540 mRNA_5172 0.87 -1.4
71,048 - 13540 mRNA_5172 0.87 -2.6
71,065 + 13540 mRNA_5172 0.89 -1.3
71,074 + 13540 mRNA_5172 0.90 -0.1
71,121 - -1.4
71,166 + -2.3
71,171 + -0.2
71,172 + -0.6
71,205 - -0.9
71,291 - -2.2
71,304 - -3.3
71,306 + +2.0
71,308 - -0.3
71,309 + -3.1
71,310 + -1.9
71,312 - -0.2
71,316 + -1.4
71,317 + -2.0
71,318 + -0.4
71,319 + -0.7
71,320 + -1.3
71,321 - -2.1
71,322 - -3.3
71,322 + -1.9
71,327 + -0.1
71,327 - -4.9
71,330 - -1.3
71,332 - -4.0
71,337 + -1.5
71,338 - -2.9
71,338 + -0.5
71,338 + -0.3
71,342 + -1.4
71,343 - -0.8
71,345 - -0.1
71,346 + -1.0
71,347 + -0.7
71,347 + +0.6
71,348 - -1.0
71,348 + -2.2
71,349 - -2.0
71,350 + -0.8
71,350 - -1.9
71,351 - -2.3
71,352 + -0.6
71,352 + -2.3
71,352 + -0.1
71,354 + -2.6
71,355 - -2.3
71,355 - -2.9
71,360 - -0.5
71,363 + -2.3
71,365 + -1.2
71,367 + -0.5
71,367 + -1.0
71,368 - -0.8
71,369 + -1.5
71,369 + -2.2
71,371 + -2.5
71,372 + -1.4
71,374 - -1.1
71,374 - -1.2
71,396 - -0.5
71,397 + +0.1
71,405 - -2.4
71,410 + -2.6
71,413 + -0.2
71,414 + +0.2
71,414 - +0.5
71,416 - -0.7
71,417 + -2.2
71,418 - -1.1
71,419 - +0.1
71,422 + -1.1
71,430 + -0.3
71,430 + -1.9
71,432 + -1.7
71,432 - +0.6
71,433 - -0.5
71,435 - -2.1
71,435 - +1.9
71,435 + -0.5
71,436 - -3.0
71,436 - -2.2
71,436 + -2.5
71,441 + +0.1
71,441 + -2.3
71,443 - -1.2
71,444 + -1.6
71,450 + -1.7
71,451 + -0.2
71,451 + -1.5
71,452 - -2.3
71,452 + -2.4
71,452 + +0.1
71,456 + +1.1
71,458 + -0.6
71,459 - +0.1
71,463 - -2.4
71,465 - -1.6
71,473 - -1.2
71,482 - -2.9
71,504 + -2.8
71,513 - -3.4
71,530 - -3.6
71,531 - +0.1
71,534 - -0.9
71,543 + -2.2
71,544 - -0.8
71,544 - -0.6
71,559 - -0.2
71,560 - -1.8
71,560 - -3.1
71,568 + -0.2
71,574 + -1.3
71,575 - -2.3
71,577 - -1.7
71,581 + -0.1
71,585 - -0.6
71,594 + -1.0
71,604 + -0.9
71,604 - -1.6
71,634 + -0.7
71,634 - -2.0
71,636 + -3.1
71,640 - -1.6
71,678 - -1.5
71,699 + +0.2
71,706 + -2.5
71,727 - -3.0
71,727 - -3.4
71,731 + -0.7
71,731 + -0.7
71,732 + -1.9
71,735 + -1.3
71,736 + -2.5
71,740 + -2.5
71,741 - -0.8
71,744 + -1.5
71,745 + -2.0
71,751 + -0.2
71,751 - -4.4
71,752 - -1.7
71,757 - -2.1
71,762 - -1.9
71,764 + +0.2
71,771 - +0.6
71,774 - +0.4
71,775 - -0.5
71,776 + -1.6
71,782 - +0.4
71,783 - -2.9
71,789 + +1.0
71,790 - -0.9
71,793 + -1.5
71,797 - -0.9
71,797 + -1.4
71,797 + -0.4
71,798 + -2.7
71,803 - -2.0
71,804 - -0.5
71,805 + -3.4
71,829 + -0.4
71,837 - -0.0
71,837 + -3.1
71,849 + -2.0
71,852 + +1.5
71,853 - -1.5
71,862 + +0.9
71,862 + +0.2
71,863 - -1.4
71,865 + -3.3
71,866 + -2.9
71,868 + -1.4
71,868 + +0.6
71,869 - +0.2
71,877 - +0.0
71,962 - -0.3
71,965 - -1.8
71,990 - -0.5
71,995 + -2.0
72,003 + +2.0
72,006 + -1.6
72,012 - -1.4
72,013 - -1.9
72,014 - +0.5
72,028 + +0.9
72,035 - -1.7
72,146 - -3.1
72,146 - -2.5
72,146 - -3.0
72,150 - -2.1
72,163 + -1.7

Or see this region's nucleotide sequence