Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5183

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13550 and 13551 are separated by 359 nucleotides mRNA_5182: 13550 - Hypothetical Protein, at 91,915 to 92,880 13550 mRNA_5183: 13551 - K02924 RP-L39e, RPL39 large subunit ribosomal protein L39e, at 93,240 to 93,967 13551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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92,577 + 13550 mRNA_5182 0.69 -0.4
93,139 + -1.9
93,263 + +0.7
94,468 + -0.9
94,479 + -1.8
94,499 + -1.8
94,610 - +0.0
94,616 + +1.0
94,621 - -3.1
94,632 + -1.8
94,633 + -2.3
94,680 - -0.6
94,762 - -0.2
94,774 - -3.2
94,907 - +0.8
94,922 + +0.6

Or see this region's nucleotide sequence